STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP20468.1Serine protease DegQ; Belongs to the peptidase S1C family. (458 aa)    
Predicted Functional Partners:
GlpK
Glycerol kinase; Belongs to the FGGY kinase family.
   
 0.647
SFN98548.1
Hypothetical protein.
  
 0.647
RseP
Site-2 protease. Metallo peptidase. MEROPS family M50B.
 
  
 0.625
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.546
SFP20494.1
SPW repeat-containing protein.
       0.529
SFO52121.1
Glutathione-regulated potassium-efflux system protein KefB; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.507
SFP20520.1
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.465
GltB
Glutamate synthase (NADPH) large subunit.
     
 0.458
SFP00177.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
  
 
 0.454
RsfS
Ribosome-associated protein.
 
   0.447
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.