Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL31524.1 | KJL31525.1 | RS83_00389 | RS83_00390 | Autoinducer-2 (AI-2) modifying protein LsrG. | Phosphotriesterase homology protein. | 0.554 |
KJL31524.1 | aroE_1 | RS83_00389 | RS83_00391 | Autoinducer-2 (AI-2) modifying protein LsrG. | Shikimate dehydrogenase. | 0.576 |
KJL31524.1 | pgiA | RS83_00389 | RS83_00394 | Autoinducer-2 (AI-2) modifying protein LsrG. | Glucose-6-phosphate isomerase. | 0.590 |
KJL31524.1 | serA_3 | RS83_00389 | RS83_00392 | Autoinducer-2 (AI-2) modifying protein LsrG. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.582 |
KJL31524.1 | xylB_1 | RS83_00389 | RS83_00393 | Autoinducer-2 (AI-2) modifying protein LsrG. | Xylulose kinase; Belongs to the FGGY kinase family. | 0.621 |
KJL31525.1 | KJL31524.1 | RS83_00390 | RS83_00389 | Phosphotriesterase homology protein. | Autoinducer-2 (AI-2) modifying protein LsrG. | 0.554 |
KJL31525.1 | aroE_1 | RS83_00390 | RS83_00391 | Phosphotriesterase homology protein. | Shikimate dehydrogenase. | 0.960 |
KJL31525.1 | pgiA | RS83_00390 | RS83_00394 | Phosphotriesterase homology protein. | Glucose-6-phosphate isomerase. | 0.945 |
KJL31525.1 | serA_3 | RS83_00390 | RS83_00392 | Phosphotriesterase homology protein. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.810 |
KJL31525.1 | xylB_1 | RS83_00390 | RS83_00393 | Phosphotriesterase homology protein. | Xylulose kinase; Belongs to the FGGY kinase family. | 0.890 |
aroA | aroE_1 | RS83_03433 | RS83_00391 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Shikimate dehydrogenase. | 0.546 |
aroA | gltB_1 | RS83_03433 | RS83_02999 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Glutamate synthase [NADPH] large chain. | 0.619 |
aroA | rsmB | RS83_03433 | RS83_02987 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.428 |
aroA | trpE | RS83_03433 | RS83_03315 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Anthranilate synthase component 1. | 0.683 |
aroE_1 | KJL31524.1 | RS83_00391 | RS83_00389 | Shikimate dehydrogenase. | Autoinducer-2 (AI-2) modifying protein LsrG. | 0.576 |
aroE_1 | KJL31525.1 | RS83_00391 | RS83_00390 | Shikimate dehydrogenase. | Phosphotriesterase homology protein. | 0.960 |
aroE_1 | aroA | RS83_00391 | RS83_03433 | Shikimate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.546 |
aroE_1 | gltB_1 | RS83_00391 | RS83_02999 | Shikimate dehydrogenase. | Glutamate synthase [NADPH] large chain. | 0.571 |
aroE_1 | nadD | RS83_00391 | RS83_02696 | Shikimate dehydrogenase. | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.589 |
aroE_1 | pgiA | RS83_00391 | RS83_00394 | Shikimate dehydrogenase. | Glucose-6-phosphate isomerase. | 0.963 |
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