STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldA_1Lactaldehyde dehydrogenase. (472 aa)    
Predicted Functional Partners:
betB_2
NAD/NADP-dependent betaine aldehyde dehydrogenase.
 
    
0.877
betA
Oxygen-dependent choline dehydrogenase.
 
  
 0.714
KJL30036.1
D-alanyl-D-alanine carboxypeptidase precursor.
  
  
 0.686
gsiC_7
Glutathione transport system permease protein GsiC.
       0.661
menC
O-succinylbenzoate synthase.
       0.661
oppD_7
Oligopeptide transport ATP-binding protein OppD.
       0.660
oppF_6
Oligopeptide transport ATP-binding protein OppF.
       0.660
oppA_3
Oligopeptide-binding protein OppA precursor.
       0.657
KJL30037.1
Hypothetical protein.
       0.648
paaK
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
 
 0.499
Your Current Organism:
Microbacterium oxydans
NCBI taxonomy Id: 82380
Other names: Brevibacterium oxydans, CIP 66.12, DSM 20578, IFO 15586, JCM 12414, LMG 23389, LMG:23389, M. oxydans, Microbacterium sp. W702, NBRC 15586, NCIB 9944, NCIB:9944, NCIMB 9944, NCTC 13564, VKM Ac-2116, VKM:Ac:2116
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