STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrA_1HTH-type transcriptional repressor YtrA. (119 aa)    
Predicted Functional Partners:
ytrA_2
HTH-type transcriptional repressor YtrA.
 
   
 0.677
cobB
NAD-dependent protein deacetylase.
  
    0.629
KJL30067.1
Hypothetical protein.
       0.628
ytcD
Putative HTH-type transcriptional regulator YtcD.
   
    0.572
gpr_2
L-glyceraldehyde 3-phosphate reductase.
       0.568
zur
Zinc uptake regulation protein; Belongs to the Fur family.
  
  
 0.566
viuB_3
Vibriobactin utilization protein ViuB.
       0.566
iciA-2
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.565
ideR_1
Iron-dependent repressor IdeR.
  
    0.528
KJL28548.1
Hypothetical protein.
  
    0.528
Your Current Organism:
Microbacterium oxydans
NCBI taxonomy Id: 82380
Other names: Brevibacterium oxydans, CIP 66.12, DSM 20578, IFO 15586, JCM 12414, LMG 23389, LMG:23389, M. oxydans, Microbacterium sp. W702, NBRC 15586, NCIB 9944, NCIB:9944, NCIMB 9944, NCTC 13564, VKM Ac-2116, VKM:Ac:2116
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.