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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acdA_2Acyl-CoA dehydrogenase. (394 aa)    
Predicted Functional Partners:
etfA
Electron transfer flavoprotein subunit alpha.
 
 0.890
fadB
Fatty acid oxidation complex subunit alpha.
 0.839
echA8_2
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.832
etfB
Electron transfer flavoprotein subunit beta.
 
 
 0.826
aldHT
Aldehyde dehydrogenase, thermostable.
  
 
 0.814
fadB2
3-hydroxybutyryl-CoA dehydrogenase.
 
 0.811
puuE
4-aminobutyrate aminotransferase PuuE.
  
    0.794
echA8_1
Putative enoyl-CoA hydratase echA8.
 
 0.685
eryA
Erythronolide synthase, modules 1 and 2.
  
 0.684
echA8_3
Putative enoyl-CoA hydratase echA8.
 
 0.680
Your Current Organism:
Microbacterium oxydans
NCBI taxonomy Id: 82380
Other names: Brevibacterium oxydans, CIP 66.12, DSM 20578, IFO 15586, JCM 12414, LMG 23389, LMG:23389, M. oxydans, Microbacterium sp. W702, NBRC 15586, NCIB 9944, NCIB:9944, NCIMB 9944, NCTC 13564, VKM Ac-2116, VKM:Ac:2116
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