Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL28760.1 | csoR_3 | RS83_02241 | RS83_02242 | Hypothetical protein. | Copper-sensing transcriptional repressor CsoR. | 0.509 |
KJL28760.1 | hutG | RS83_02241 | RS83_02240 | Hypothetical protein. | Formimidoylglutamase; Belongs to the arginase family. | 0.786 |
argD_2 | eryA | RS83_02514 | RS83_01864 | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Erythronolide synthase, modules 1 and 2. | 0.458 |
argD_2 | hutG | RS83_02514 | RS83_02240 | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Formimidoylglutamase; Belongs to the arginase family. | 0.518 |
argD_2 | putA_1 | RS83_02514 | RS83_00436 | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Bifunctional protein PutA; Belongs to the aldehyde dehydrogenase family. | 0.472 |
argD_2 | putA_2 | RS83_02514 | RS83_00809 | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Bifunctional protein PutA; Belongs to the aldehyde dehydrogenase family. | 0.472 |
csoR_3 | KJL28760.1 | RS83_02242 | RS83_02241 | Copper-sensing transcriptional repressor CsoR. | Hypothetical protein. | 0.509 |
csoR_3 | hutG | RS83_02242 | RS83_02240 | Copper-sensing transcriptional repressor CsoR. | Formimidoylglutamase; Belongs to the arginase family. | 0.519 |
eryA | argD_2 | RS83_01864 | RS83_02514 | Erythronolide synthase, modules 1 and 2. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.458 |
eryA | hutG | RS83_01864 | RS83_02240 | Erythronolide synthase, modules 1 and 2. | Formimidoylglutamase; Belongs to the arginase family. | 0.463 |
eryA | hutH | RS83_01864 | RS83_00008 | Erythronolide synthase, modules 1 and 2. | Histidine ammonia-lyase. | 0.539 |
eryA | putA_1 | RS83_01864 | RS83_00436 | Erythronolide synthase, modules 1 and 2. | Bifunctional protein PutA; Belongs to the aldehyde dehydrogenase family. | 0.628 |
eryA | putA_2 | RS83_01864 | RS83_00809 | Erythronolide synthase, modules 1 and 2. | Bifunctional protein PutA; Belongs to the aldehyde dehydrogenase family. | 0.628 |
eryA | rocD | RS83_01864 | RS83_00441 | Erythronolide synthase, modules 1 and 2. | Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.458 |
hutG | KJL28760.1 | RS83_02240 | RS83_02241 | Formimidoylglutamase; Belongs to the arginase family. | Hypothetical protein. | 0.786 |
hutG | argD_2 | RS83_02240 | RS83_02514 | Formimidoylglutamase; Belongs to the arginase family. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.518 |
hutG | csoR_3 | RS83_02240 | RS83_02242 | Formimidoylglutamase; Belongs to the arginase family. | Copper-sensing transcriptional repressor CsoR. | 0.519 |
hutG | eryA | RS83_02240 | RS83_01864 | Formimidoylglutamase; Belongs to the arginase family. | Erythronolide synthase, modules 1 and 2. | 0.463 |
hutG | hutH | RS83_02240 | RS83_00008 | Formimidoylglutamase; Belongs to the arginase family. | Histidine ammonia-lyase. | 0.848 |
hutG | hutI_1 | RS83_02240 | RS83_00904 | Formimidoylglutamase; Belongs to the arginase family. | Imidazolonepropionase. | 0.791 |
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