Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL28910.1 | kdgR_2 | RS83_02392 | RS83_02389 | Hypothetical protein. | Pectin degradation repressor protein KdgR. | 0.550 |
KJL28910.1 | ycjO_6 | RS83_02392 | RS83_02390 | Hypothetical protein. | Inner membrane ABC transporter permease protein YcjO. | 0.817 |
KJL30464.1 | iclR_3 | RS83_00850 | RS83_02402 | Tripartite tricarboxylate transporter family receptor. | Acetate operon repressor. | 0.486 |
KJL30464.1 | kdgR_2 | RS83_00850 | RS83_02389 | Tripartite tricarboxylate transporter family receptor. | Pectin degradation repressor protein KdgR. | 0.537 |
KJL30464.1 | pcaR | RS83_00850 | RS83_00125 | Tripartite tricarboxylate transporter family receptor. | Pca regulon regulatory protein. | 0.559 |
KJL30464.1 | yiaJ_1 | RS83_00850 | RS83_00517 | Tripartite tricarboxylate transporter family receptor. | HTH-type transcriptional regulator YiaJ. | 0.552 |
dgoD_2 | kdgR_2 | RS83_02388 | RS83_02389 | D-galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Pectin degradation repressor protein KdgR. | 0.654 |
iclR_2 | kdgR_2 | RS83_02067 | RS83_02389 | Acetate operon repressor. | Pectin degradation repressor protein KdgR. | 0.658 |
iclR_2 | kipA_1 | RS83_02067 | RS83_00232 | Acetate operon repressor. | KipI antagonist. | 0.810 |
iclR_2 | pcaR | RS83_02067 | RS83_00125 | Acetate operon repressor. | Pca regulon regulatory protein. | 0.636 |
iclR_2 | yiaJ_1 | RS83_02067 | RS83_00517 | Acetate operon repressor. | HTH-type transcriptional regulator YiaJ. | 0.658 |
iclR_2 | yiaJ_2 | RS83_02067 | RS83_03600 | Acetate operon repressor. | HTH-type transcriptional regulator YiaJ. | 0.564 |
iclR_3 | KJL30464.1 | RS83_02402 | RS83_00850 | Acetate operon repressor. | Tripartite tricarboxylate transporter family receptor. | 0.486 |
iclR_3 | kdgR_2 | RS83_02402 | RS83_02389 | Acetate operon repressor. | Pectin degradation repressor protein KdgR. | 0.772 |
iclR_3 | kipA_1 | RS83_02402 | RS83_00232 | Acetate operon repressor. | KipI antagonist. | 0.810 |
iclR_3 | pcaR | RS83_02402 | RS83_00125 | Acetate operon repressor. | Pca regulon regulatory protein. | 0.773 |
iclR_3 | yiaJ_1 | RS83_02402 | RS83_00517 | Acetate operon repressor. | HTH-type transcriptional regulator YiaJ. | 0.772 |
iclR_3 | yiaJ_2 | RS83_02402 | RS83_03600 | Acetate operon repressor. | HTH-type transcriptional regulator YiaJ. | 0.763 |
kdgR_2 | KJL28910.1 | RS83_02389 | RS83_02392 | Pectin degradation repressor protein KdgR. | Hypothetical protein. | 0.550 |
kdgR_2 | KJL30464.1 | RS83_02389 | RS83_00850 | Pectin degradation repressor protein KdgR. | Tripartite tricarboxylate transporter family receptor. | 0.537 |
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