STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfiB2-oxoglutarate carboxylase small subunit; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1135 aa)    
Predicted Functional Partners:
birA_2
Bifunctional ligase/repressor BirA.
 
 
 0.999
def_1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.930
KJL27537.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein.
     
 0.752
parA
Chromosome partitioning protein ParA.
       0.724
accD5
Putative propionyl-CoA carboxylase beta chain 5.
 
 0.715
KJL27995.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
 
 0.710
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.668
pckG
Phosphoenolpyruvate carboxykinase [GTP]; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
  
  
 0.665
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
     
 0.653
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 
 0.647
Your Current Organism:
Microbacterium oxydans
NCBI taxonomy Id: 82380
Other names: Brevibacterium oxydans, CIP 66.12, DSM 20578, IFO 15586, JCM 12414, LMG 23389, LMG:23389, M. oxydans, Microbacterium sp. W702, NBRC 15586, NCIB 9944, NCIB:9944, NCIMB 9944, NCTC 13564, VKM Ac-2116, VKM:Ac:2116
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