Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL29347.1 | eno | RS83_01976 | RS83_03628 | Putative oxidoreductase. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.653 |
KJL29347.1 | fprA_1 | RS83_01976 | RS83_00255 | Putative oxidoreductase. | NADPH-ferredoxin reductase FprA. | 0.842 |
KJL29347.1 | fprA_2 | RS83_01976 | RS83_01369 | Putative oxidoreductase. | NADPH-ferredoxin reductase FprA. | 0.842 |
KJL29347.1 | fusA | RS83_01976 | RS83_01357 | Putative oxidoreductase. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.674 |
KJL29347.1 | gdhA | RS83_01976 | RS83_03647 | Putative oxidoreductase. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.879 |
KJL29347.1 | gltB_1 | RS83_01976 | RS83_02999 | Putative oxidoreductase. | Glutamate synthase [NADPH] large chain. | 0.995 |
KJL29347.1 | gltB_2 | RS83_01976 | RS83_03000 | Putative oxidoreductase. | Glutamate synthase [NADPH] small chain. | 0.842 |
KJL29347.1 | pyk | RS83_01976 | RS83_03001 | Putative oxidoreductase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.619 |
KJL29347.1 | trpB | RS83_01976 | RS83_02996 | Putative oxidoreductase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.514 |
amt | gltB_1 | RS83_02911 | RS83_02999 | Ammonia channel precursor. | Glutamate synthase [NADPH] large chain. | 0.980 |
amt | gltB_2 | RS83_02911 | RS83_03000 | Ammonia channel precursor. | Glutamate synthase [NADPH] small chain. | 0.551 |
eno | KJL29347.1 | RS83_03628 | RS83_01976 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Putative oxidoreductase. | 0.653 |
eno | fusA | RS83_03628 | RS83_01357 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.838 |
eno | gltB_1 | RS83_03628 | RS83_02999 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Glutamate synthase [NADPH] large chain. | 0.975 |
eno | pyk | RS83_03628 | RS83_03001 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.997 |
fprA_1 | KJL29347.1 | RS83_00255 | RS83_01976 | NADPH-ferredoxin reductase FprA. | Putative oxidoreductase. | 0.842 |
fprA_1 | gdhA | RS83_00255 | RS83_03647 | NADPH-ferredoxin reductase FprA. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.523 |
fprA_1 | gltB_1 | RS83_00255 | RS83_02999 | NADPH-ferredoxin reductase FprA. | Glutamate synthase [NADPH] large chain. | 0.999 |
fprA_2 | KJL29347.1 | RS83_01369 | RS83_01976 | NADPH-ferredoxin reductase FprA. | Putative oxidoreductase. | 0.842 |
fprA_2 | gdhA | RS83_01369 | RS83_03647 | NADPH-ferredoxin reductase FprA. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.523 |
page 1 of 3