STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL28558.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
eryA
Erythronolide synthase, modules 1 and 2.
  
  
 0.778
ytrA_2
HTH-type transcriptional repressor YtrA.
       0.570
KJL28555.1
CAAX amino terminal protease self- immunity.
       0.562
KJL28556.1
Hypothetical protein.
       0.545
pcnB
Poly(A) polymerase I precursor; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
   0.528
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
  
 0.470
KJL28554.1
Putative O-methyltransferase.
       0.469
fadB
Fatty acid oxidation complex subunit alpha.
  
 
 0.413
KJL28141.1
Putative FAD-linked oxidoreductase.
  
 
 0.412
KJL28545.1
L-gulono-1,4-lactone dehydrogenase.
 
   0.409
Your Current Organism:
Microbacterium oxydans
NCBI taxonomy Id: 82380
Other names: Brevibacterium oxydans, CIP 66.12, DSM 20578, IFO 15586, JCM 12414, LMG 23389, LMG:23389, M. oxydans, Microbacterium sp. W702, NBRC 15586, NCIB 9944, NCIB:9944, NCIMB 9944, NCTC 13564, VKM Ac-2116, VKM:Ac:2116
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