STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91545.1Hypothetical protein; Draft locus tag CAMGR0001_0118. (126 aa)    
Predicted Functional Partners:
csx1
CRISPR/Cas system-associated protein Csx1 (DxTHG domain); Pfam match to PF09455.6 Cas_DxTHG; draft locus tag CAMGR0001_0119.
       0.796
AKT91543.1
CRISPR/Cas system-associated protein; Pfam match to PF09670.6 Cas_Cas02710; draft locus tag CAMGR0001_0120.
       0.783
cas10
CRISPR/Cas system-associated RAMP protein Cas10, type III-A/MTUBE; Draft locus tag CAMGR0001_1747.
 
   
 0.767
csm3
CRISPR/Cas system-associated RAMP protein Csm3, type III-A/MTUBE; Pfam match to PF03787.11 RAMPs; draft locus tag CAMGR0001_1749.
 
     0.718
cas6a
CRISPR/Cas system-associated RAMP protein Cas6, type III; Pfam match to PF10040.5 DUF2276; draft locus tag CAMGR0001_0358.
 
     0.674
cas2a
CRISPR/Cas system-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.669
csm4
CRISPR/Cas system-associated RAMP protein Csm4, type III-A/MTUBE; Draft locus tag CAMGR0001_1750.
 
     0.607
csm2
CRISPR/Cas system-associated protein Csm2, type III-A/MTUBE; Pfam match to PF03750.9 DUF310; draft locus tag CAMGR0001_1748.
 
     0.570
csm5
CRISPR/Cas system-associated RAMP protein Csm5, type III-A/MTUBE; Draft locus tag CAMGR0001_1752.
 
   
 0.461
cas2b
CRISPR/Cas system-associated endoribonuclease Cas2, type I-B/HMARI; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.426
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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