STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91569.1Putative protein (RDD domain); Pfam match to PF06271.8 RDD; draft locus tag CAMGR0001_0080. (145 aa)    
Predicted Functional Partners:
lptD
Putative lipooligosaccharide transport system, OM component (LptD family); Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
     0.861
AKT91571.1
Putative protein, putative phosphoribosyltransferase; Pfam match to PF00156.23 Pribosyltran; draft locus tag CAMGR0001_0078.
 
     0.839
pnp
Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.802
purD
Phosphoribosylamine-glycine ligase; Pfam matches to PF01071.15 GARS_A, and to PF02844.11 GARS_N, and to PF02843.12 GARS_C; draft locus tag CAMGR0001_0081; Belongs to the GARS family.
       0.800
AKT91573.1
Putative universal stress protein UspA; Pfam match to PF00582.22 Usp; draft locus tag CAMGR0001_0076.
       0.740
hemD
Uroporphyrinogen III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.629
atpF-2
ATP synthase, F0 complex, b subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.552
atpH
ATP synthase, F1 complex, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
    0.539
AKT92688.1
Ribosome-associated heat shock protein (S4 domain); Pfam match to PF01479.21 S4; draft locus tag CAMGR0001_0768.
   
    0.497
ftsX
Cell division protein FtsX; Draft locus tag CAMGR0001_1547.
  
     0.455
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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