STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91571.1Putative protein, putative phosphoribosyltransferase; Pfam match to PF00156.23 Pribosyltran; draft locus tag CAMGR0001_0078. (239 aa)    
Predicted Functional Partners:
AKT91569.1
Putative protein (RDD domain); Pfam match to PF06271.8 RDD; draft locus tag CAMGR0001_0080.
 
     0.839
purD
Phosphoribosylamine-glycine ligase; Pfam matches to PF01071.15 GARS_A, and to PF02844.11 GARS_N, and to PF02843.12 GARS_C; draft locus tag CAMGR0001_0081; Belongs to the GARS family.
       0.800
lptD
Putative lipooligosaccharide transport system, OM component (LptD family); Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
       0.800
pnp
Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.800
AKT91573.1
Putative universal stress protein UspA; Pfam match to PF00582.22 Usp; draft locus tag CAMGR0001_0076.
  
  
 0.747
hemD
Uroporphyrinogen III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.598
AKT92728.1
Putative protein, putative aldolase; Pfam match to PF00596.17 Aldolase_II; draft locus tag CAMGR0001_2319.
  
     0.492
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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