STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91730.1Putative protein (NifU domain), possible thioredoxin; Pfam match to PF01106.13 NifU; draft locus tag CAMGR0001_2746. (88 aa)    
Predicted Functional Partners:
murE
UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
       0.800
AKT91729.1
Hypothetical protein; Draft locus tag CAMGR0001_2747.
       0.800
AKT91726.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
    0.770
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
       0.768
por
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; Pfam matches to PF01855.15 POR_N, and to PF01558.14 POR, and to PF10371.5 EKR, and to PF12838.3 Fer4_7, and to PF02775.17 TPP_enzyme_C; draft locus tag CAMGR0001_2171.
  
  
 0.716
iscS
Cysteine desulfurase/aminotransferase (IscS/NifS); Pfam match to PF00266.15 Aminotran_5; draft locus tag CAMGR0001_0102.
  
 
 0.534
ilvD
Dihydroxyacid dehydratase; Pfam match to PF00920.17 ILVD_EDD; draft locus tag CAMGR0001_0185; Belongs to the IlvD/Edd family.
   
 
 0.529
frdB
Fumarate reductase, iron-sulfur subunit; Pfam matches to PF13085.2 Fer2_3, and to PF13183.2 Fer4_8; draft locus tag CAMGR0001_1420; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.509
mfrB
Methylmenaquinol:fumarate reductase, MfrB subunit; Pfam matches to PF13085.2 Fer2_3, and to PF13183.2 Fer4_8; draft locus tag CAMGR0001_0883.
  
 
 0.506
AKT92735.1
Hypothetical protein; Draft locus tag CAMGR0001_2331.
   
 
 0.501
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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