STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91809.1Putative protein (UPF0102 domain); Pfam match to PF02021.13 UPF0102; draft locus tag CAMGR0001_2653; Belongs to the UPF0102 family. (112 aa)    
Predicted Functional Partners:
AKT91807.1
Aspartate aminotransferase; Pfam match to PF00155.17 Aminotran_1_2; draft locus tag CAMGR0001_2655.
       0.800
hom
Pfam matches to PF00742.15 Homoserine_dh, and to PF03447.12 NAD_binding_3, and to PF01842.21 ACT; draft locus tag CAMGR0001_2654.
       0.800
trx
Thioredoxin; Pfam match to PF00085.16 Thioredoxin; draft locus tag CAMGR0001_2652; Belongs to the thioredoxin family.
  
    0.625
AKT93538.1
Putative PAS sensor-containing diguanylate phosphodiesterase; Pfam matches to PF00563.16 EAL, and to PF00989.20 PAS; draft locus tag CAMGR0001_0214.
   
    0.527
AKT91482.1
Diguanylate cyclase/phosphodiesterase; Pfam matches to PF00563.16 EAL, and to PF00990.17 GGDEF; draft locus tag CAMGR0001_0279.
   
    0.485
trxB
Thioredoxin reductase; Pfam match to PF07992.10 Pyr_redox_2; draft locus tag CAMGR0001_2651.
       0.464
AKT91550.1
Mg chelatase-related protein; Pfam matches to PF01078.17 Mg_chelatase, and to PF13541.2 ChlI, and to PF13335.2 Mg_chelatase_C; draft locus tag CAMGR0001_0109.
 
  
 0.437
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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