Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| atpC | atpD | CGRAC_0385 | CGRAC_0384 | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.999 |
| atpC | atpF-2 | CGRAC_0385 | CGRAC_0380 | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | ATP synthase, F0 complex, b subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.999 |
| atpC | atpG | CGRAC_0385 | CGRAC_0383 | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | ATP synthase, F1 complex, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
| atpC | pal | CGRAC_0385 | CGRAC_0391 | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | Tol-Pal system peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.593 |
| atpC | tolA | CGRAC_0385 | CGRAC_0388 | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | Tol-Pal system subunit TolA; Pfam match to PF13103.2 TonB_2; draft locus tag CAMGR0001_2596. | 0.800 |
| atpC | tolB | CGRAC_0385 | CGRAC_0390 | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | Tol-Pal system translocation protein TolB; Draft locus tag CAMGR0001_2594. | 0.734 |
| atpC | tolQ | CGRAC_0385 | CGRAC_0386 | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | Tol-Pal system subunit TolQ; Pfam match to PF01618.12 MotA_ExbB; draft locus tag CAMGR0001_2598. | 0.808 |
| atpC | tolR | CGRAC_0385 | CGRAC_0387 | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | Tol-Pal system subunit TolR; Pfam match to PF02472.12 ExbD; draft locus tag CAMGR0001_2597. | 0.800 |
| atpD | atpC | CGRAC_0384 | CGRAC_0385 | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.999 |
| atpD | atpF-2 | CGRAC_0384 | CGRAC_0380 | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | ATP synthase, F0 complex, b subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.999 |
| atpD | atpG | CGRAC_0384 | CGRAC_0383 | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | ATP synthase, F1 complex, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
| atpD | pal | CGRAC_0384 | CGRAC_0391 | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Tol-Pal system peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.607 |
| atpD | tolA | CGRAC_0384 | CGRAC_0388 | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Tol-Pal system subunit TolA; Pfam match to PF13103.2 TonB_2; draft locus tag CAMGR0001_2596. | 0.786 |
| atpD | tolB | CGRAC_0384 | CGRAC_0390 | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Tol-Pal system translocation protein TolB; Draft locus tag CAMGR0001_2594. | 0.709 |
| atpD | tolQ | CGRAC_0384 | CGRAC_0386 | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Tol-Pal system subunit TolQ; Pfam match to PF01618.12 MotA_ExbB; draft locus tag CAMGR0001_2598. | 0.785 |
| atpD | tolR | CGRAC_0384 | CGRAC_0387 | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Tol-Pal system subunit TolR; Pfam match to PF02472.12 ExbD; draft locus tag CAMGR0001_2597. | 0.785 |
| atpF-2 | atpC | CGRAC_0380 | CGRAC_0385 | ATP synthase, F0 complex, b subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | ATP synthase, F1 complex, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.999 |
| atpF-2 | atpD | CGRAC_0380 | CGRAC_0384 | ATP synthase, F0 complex, b subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | ATP synthase, F1 complex, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.999 |
| atpF-2 | atpG | CGRAC_0380 | CGRAC_0383 | ATP synthase, F0 complex, b subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | ATP synthase, F1 complex, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
| atpF-2 | pal | CGRAC_0380 | CGRAC_0391 | ATP synthase, F0 complex, b subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | Tol-Pal system peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.591 |
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