STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91869.1WG beta repeat domain-containing protein; Pfam matches to PF14903.2 WG_beta_rep, and to PF14903.2 WG_beta_rep, and to PF14903.2 WG_beta_rep, and to PF14903.2 WG_beta_rep; draft locus tag CAMGR0001_2575. (371 aa)    
Predicted Functional Partners:
AKT91868.1
Asparaginase family protein; Pfam match to PF01112.14 Asparaginase_2; draft locus tag CAMGR0001_2576.
 
     0.807
AKT91870.1
RNA ligase; Pfam match to PF13207.2 AAA_17; draft locus tag CAMGR0001_2573.
       0.441
AKT93538.1
Putative PAS sensor-containing diguanylate phosphodiesterase; Pfam matches to PF00563.16 EAL, and to PF00989.20 PAS; draft locus tag CAMGR0001_0214.
  
  
 0.414
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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