STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91894.1Putative lipooligosaccharide transport system, permease component (LptG family); Pfam match to PF03739.10 YjgP_YjgQ; draft locus tag CAMGR0001_2542. (348 aa)    
Predicted Functional Partners:
AKT92690.1
Putative lipooligosaccharide transport system, ATP-binding component (LptB family); Pfam match to PF00005.23 ABC_tran; draft locus tag CAMGR0001_0766.
   
 0.980
AKT92874.1
Putative lipooligosaccharide transport system, permease component (LptF family); Pfam match to PF03739.10 YjgP_YjgQ; draft locus tag CAMGR0001_1957.
  
  
 0.950
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
     0.836
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.800
lptA
Putative lipooligosaccharide transport system, periplasmic component (LptA family); Pfam match to PF03968.10 OstA; draft locus tag CAMGR0001_2360.
 
   
 0.800
mreC
Rod shape-determining protein MreC; Pfam match to PF04085.10 MreC; draft locus tag CAMGR0001_2715.
  
 
 0.784
lpxH
UDP-2,3-diacylglucosamine hydrolase; Pfam match to PF00149.24 Metallophos; draft locus tag CAMGR0001_2548.
 
     0.782
ftsX
Cell division protein FtsX; Draft locus tag CAMGR0001_1547.
  
    0.773
hemD
Uroporphyrinogen III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.772
trxC
Putative periplasmic thioredoxin; Draft locus tag CAMGR0001_1189.
  
     0.763
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.