STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91945.1Putative selenium metabolism protein, YedE family; Pfam match to PF04143.10 Sulf_transp; draft locus tag CAMGR0001_1895. (353 aa)    
Predicted Functional Partners:
yedF
Selenium metabolism protein; Pfam match to PF01206.13 TusA; draft locus tag CAMGR0001_1852; Belongs to the sulfur carrier protein TusA family.
 
  
 0.843
AKT91944.1
Hypothetical protein; Draft locus tag CAMGR0001_1896.
       0.773
hgdD
2-hydroxyglutaryl-CoA dehydratase, D-component; Pfam match to PF06050.9 HGD-D; draft locus tag CAMGR0001_0538.
 
    0.624
AKT93415.1
Putative protein (DUF364, DUF4213 domains); Pfam matches to PF04016.8 DUF364, and to PF13938.2 DUF4213; draft locus tag CAMGR0001_2215.
  
     0.453
selA
Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.427
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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