STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT91963.1Putative lipoprotein; Pfam match to PF13036.2 LpoB; draft locus tag CAMGR0001_1870. (210 aa)    
Predicted Functional Partners:
rpsU
30S ribosomal protein S21; Draft locus tag CAMGR0001_1871; Belongs to the bacterial ribosomal protein bS21 family.
       0.618
nrdD2
Anaerobic ribonucleoside triphosphate reductase; Pfam matches to PF13597.2 NRDD, and to PF03477.12 ATP-cone; draft locus tag CAMGR0001_1869.
       0.512
pbpA
Penicillin-binding protein 1A; Bifunctional; Pfam matches to PF00912.18 Transgly, and to PF00905.18 Transpeptidase; draft locus tag CAMGR0001_1175.
    
 
 0.477
nrdD1
Anaerobic ribonucleoside triphosphate reductase (N-terminal region); Pfam match to PF13597.2 NRDD; draft locus tag CAMGR0001_1868.
       0.434
nrdG
Anaerobic ribonucleoside triphosphate reductase activating protein; Pfam matches to PF04055.17 Radical_SAM, and to PF13353.2 Fer4_12; draft locus tag CAMGR0001_1867.
       0.411
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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