STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhCFormate dehydrogenase N, cytochrome b-556 subunit; Pfam match to PF01292.16 Ni_hydr_CYTB; draft locus tag CAMGR0001_1853. (319 aa)    
Predicted Functional Partners:
fdhG
Formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 
 0.992
fdhF
Formate dehydrogenase N, alpha subunit, selenocysteine-containing; Pfam matches to PF00384.18 Molybdopterin, and to PF01568.17 Molydop_binding; draft locus tags CAMGR0001_0419 and CAMGR0001_0420; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.991
fdhH
Formate dehydrogenase H, selenocysteine-containing; Pfam matches to PF00384.18 Molybdopterin, and to PF01568.17 Molydop_binding; draft locus tags CAMGR0001_2422 and CAMGR0001_2423; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.955
AKT93408.1
Carbon-monoxide dehydrogenase; Pfam match to PF03063.16 Prismane; draft locus tag CAMGR0001_2201.
     
  0.900
mez
Malate oxidoreductase; Pfam matches to PF00390.15 malic, and to PF03949.11 Malic_M; draft locus tag CAMGR0001_2708.
   
 
  0.802
pycB
Pyruvate carboxylase, subunit B; Pfam matches to PF02436.14 PYC_OADA, and to PF00364.18 Biotin_lipoyl, and to PF00682.15 HMGL-like; draft locus tag CAMGR0001_0046.
     
  0.800
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
     
 0.800
mdh
Malate dehydrogenase, NAD-dependent; Pfam matches to PF00056.19 Ldh_1_N, and to PF02866.14 Ldh_1_C; draft locus tag CAMGR0001_0943; Belongs to the LDH/MDH superfamily.
     
  0.800
pycA
Pyruvate carboxylase, subunit A; Pfam matches to PF02786.13 CPSase_L_D2, and to PF00289.18 CPSase_L_chain, and to PF02785.15 Biotin_carb_C; draft locus tag CAMGR0001_0759.
     
  0.800
AKT93319.1
Iron-sulfur cluster domain protein; Pfam match to PF12838.3 Fer4_7; draft locus tags CAMGR0001_0414 and CAMGR0001_0415.
 
     0.800
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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