STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsaBN6-L-threonylcarbamoyladenine synthase, TsaB subunit; Draft locus tag CAMGR0001_1625. (132 aa)    
Predicted Functional Partners:
tsaD
N6-L-threonylcarbamoyladenine synthase, TsaD subunit; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 
 0.981
tsaE
N6-L-threonylcarbamoyladenine synthase, TsaE subunit; Pfam match to PF02367.13 TsaE; draft locus tag CAMGR0001_0767.
  
 
 0.963
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
       0.795
lpxC
UDP-3-O-acyl-N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
       0.633
hisIE
phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase; Bifunctional; Pfam matches to PF01502.14 PRA-CH, and to PF01503.13 PRA-PH; draft locus tag CAMGR0001_0015; In the N-terminal section; belongs to the PRA-CH family.
     
 0.554
AKT92996.1
uracil-DNA glycosylase family protein; Pfam match to PF03167.15 UDG; draft locus tag CAMGR0001_0677.
  
    0.536
AKT92101.1
Zinc metallopeptidase, M23 family; Pfam match to PF01551.18 Peptidase_M23; draft locus tag CAMGR0001_1627.
       0.533
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
       0.494
AKT93187.1
Putative protein, possible virulence protein; Pfam match to PF11731.4 Cdd1; draft locus tag CAMGR0001_0593.
  
 
 0.488
birA
biotin-[acetyl-CoA-carboxylase] ligase; Pfam match to PF03099.15 BPL_LplA_LipB; draft locus tag CAMGR0001_2608.
   
    0.474
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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