STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrBAspartate carbamoyltransferase, catalytic subunit; Pfam matches to PF02729.17 OTCace_N, and to PF00185.20 OTCace; draft locus tag CAMGR0001_1584; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (309 aa)    
Predicted Functional Partners:
carB
Carbamoylphosphate synthase, large subunit; Pfam matches to PF02786.13 CPSase_L_D2, and to PF02786.13 CPSase_L_D2, and to PF02787.15 CPSase_L_D3, and to PF02142.18 MGS; draft locus tag CAMGR0001_2714; Belongs to the CarB family.
 
 0.999
carA
Carbamoylphosphate synthase, small subunit; Pfam matches to PF00117.24 GATase, and to PF00988.18 CPSase_sm_chain; draft locus tag CAMGR0001_2631; Belongs to the CarA family.
 
 0.999
pyrC2
Dihydroorotase, multifunctional complex type; Pfam match to PF01979.16 Amidohydro_1; draft locus tags CAMGR0001_1582 and CAMGR0001_1583.
 0.999
iadA
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation.
  
 
 0.969
pyrD
Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
 
  
 0.933
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 
 0.931
AKT92787.1
Pfam match to PF00860.16 Xan_ur_permease; draft locus tag CAMGR0001_2395.
 
  
 0.929
pyrF
Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
 
  
 0.928
AKT93281.1
Aspartate racemase; Pfam match to PF01177.18 Asp_Glu_race; draft locus tag CAMGR0001_0473; Belongs to the aspartate/glutamate racemases family.
     
 0.905
AKT93382.1
Aspartate racemase; Pfam match to PF01177.18 Asp_Glu_race; draft locus tag CAMGR0001_2170.
     
 0.905
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.