STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluD23S rRNA pseudouridine synthase; Pfam matches to PF00849.18 PseudoU_synth_2, and to PF01479.21 S4; draft locus tag CAMGR0001_1543; Belongs to the pseudouridine synthase RluA family. (495 aa)    
Predicted Functional Partners:
obgE
GTPase ObgE; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
 
 
 
 0.894
AKT92157.1
Fibronectin type III domain-containing protein; Pfam match to PF00041.17 fn3; draft locus tag CAMGR0001_1544.
 
    0.827
trmI
tRNA m7G46 methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.820
ftsE
Cell division ATP-binding protein FtsE; Pfam match to PF00005.23 ABC_tran; draft locus tag CAMGR0001_1546.
   
   0.815
AKT92153.1
Zinc metallopeptidase, M23 family; Pfam match to PF01551.18 Peptidase_M23; draft locus tag CAMGR0001_1548.
       0.800
ftsX
Cell division protein FtsX; Draft locus tag CAMGR0001_1547.
       0.800
AKT92152.1
Hypothetical protein; Draft locus tag CAMGR0001_1549.
       0.773
AKT91805.1
rRNA methyltransferase, TrmH family, group 3; Pfam matches to PF00588.15 SpoU_methylase, and to PF08032.8 SpoU_sub_bind; draft locus tag CAMGR0001_2659; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
 
 0.753
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.751
rluA
23S rRNA and tRNA pseudouridine synthase; Bifunctional; Pfam match to PF00849.18 PseudoU_synth_2; draft locus tag CAMGR0001_2865.
  
     0.740
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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