STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92210.1Transporter, LysE family; Pfam match to PF01810.14 LysE; draft locus tag CAMGR0001_1480. (198 aa)    
Predicted Functional Partners:
dapE
N-succinyl-diaminopimelate deacylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.772
AKT93181.1
Transporter, LysE family; Pfam match to PF01810.14 LysE; draft locus tag CAMGR0001_0600.
  
    0.495
AKT92041.1
Transcriptional regulator, XRE family (peptidase S24 LexA-like domain); Pfam match to PF01381.18 HTH_3; draft locus tag CAMGR0001_1695.
  
     0.433
AKT93002.1
Metal-dependent hydrolase/amidohydrolase; Pfam match to PF04909.10 Amidohydro_2; draft locus tag CAMGR0001_0689.
  
    0.433
AKT92080.1
Phage tail sheath protein FI; Draft locus tag CAMGR0001_1651.
  
     0.418
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.