STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbDTonB system transport protein ExbD; Pfam match to PF02472.12 ExbD; draft locus tag CAMGR0001_1440. (127 aa)    
Predicted Functional Partners:
exbB
TonB system transport protein ExbB; Pfam match to PF01618.12 MotA_ExbB; draft locus tag CAMGR0001_1441.
 
 
 0.988
tonB
Energy transduction protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.973
tolQ
Tol-Pal system subunit TolQ; Pfam match to PF01618.12 MotA_ExbB; draft locus tag CAMGR0001_2598.
 
 
 0.933
tolA
Tol-Pal system subunit TolA; Pfam match to PF13103.2 TonB_2; draft locus tag CAMGR0001_2596.
  
 
 0.639
AKT92275.1
Autotransporter domain protein; Draft locus tag CAMGR0001_1377.
   
 
 0.628
AKT92481.1
Hypothetical protein; Draft locus tags CAMGR0001_0001 and CAMGR0001_1097.
   
 
 0.628
yaeT
Beta-barrel assembly machinery complex, BamA/YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.592
AKT92243.1
Tetratricopeptide repeat protein; Draft locus tag CAMGR0001_1435.
 
   
 0.578
ribAB
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
   
 
 0.554
pal
Tol-Pal system peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.487
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.