STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92288.1Multi-copper polyphenol oxidoreductase laccase; Pfam match to PF02578.11 Cu-oxidase_4; draft locus tag CAMGR0001_1355. (244 aa)    
Predicted Functional Partners:
ribE
6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, alpha subunit); Pfam matches to PF00677.13 Lum_binding, and to PF00677.13 Lum_binding; draft locus tag CAMGR0001_1356.
       0.785
AKT92710.1
Type III pyridoxal 5-phosphate (PLP)-dependent enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.640
cccA
Periplasmic monoheme cytochrome c553; Pfam match to PF00034.17 Cytochrom_C; draft locus tag CAMGR0001_1357.
       0.513
iadA
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation.
       0.450
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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