STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92309.1Holliday junction resolvase-like protein (UPF0081 domain); Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (130 aa)    
Predicted Functional Partners:
ftsX
Cell division protein FtsX; Draft locus tag CAMGR0001_1547.
 
     0.696
AKT92859.1
Jag domain protein; Pfam match to PF14804.2 Jag_N; draft locus tag CAMGR0001_1941.
 
     0.641
pglB
Undecaprenyl-diphosphooligosaccharide--protein glycotransferase; Pfam match to PF02516.10 STT3; draft locus tag CAMGR0001_2013.
  
     0.622
AKT93149.1
Competence protein, ComEC family; Pfam match to PF03772.12 Competence; draft locus tag CAMGR0001_2877.
 
     0.607
AKT91824.1
Putative protein (DUF507 domain); Pfam match to PF04368.9 DUF507; draft locus tag CAMGR0001_2632.
  
     0.601
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.597
cvpA
Putative membrane protein, CvpA family; Pfam match to PF02674.12 Colicin_V; draft locus tag CAMGR0001_0489.
 
     0.596
AKT92454.1
Putative protein (putative TrkA domain); Pfam match to PF02080.17 TrkA_C; draft locus tag CAMGR0001_1127.
  
     0.578
AKT93306.1
Oligosaccharide transferase, STT3 subunit; Pfam match to PF02516.10 STT3; draft locus tag CAMGR0001_0434.
  
     0.565
miaA
tRNA(i6A37) synthase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.541
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.