STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92323.1RNA methyltransferase, RsmD family; Pfam matches to PF03602.11 Cons_hypoth95, and to PF03602.11 Cons_hypoth95; draft locus tag CAMGR0001_1307. (486 aa)    
Predicted Functional Partners:
AKT92319.1
Hypothetical membrane protein (UPF0126 domain); Pfam matches to PF03458.9 UPF0126, and to PF03458.9 UPF0126; draft locus tag CAMGR0001_1311.
  
    0.801
argD
N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase; Bifunctional; Pfam match to PF00202.17 Aminotran_3; draft locus tag CAMGR0001_1310; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.800
AKT92321.1
SAM-dependent methyltransferase, MidA family; Pfam matches to PF02636.13 Methyltransf_28, and to PF02636.13 Methyltransf_28; draft locus tag CAMGR0001_1309.
       0.800
AKT92322.1
Hypothetical protein; Draft locus tag CAMGR0001_1308.
       0.800
AKT92324.1
Putative protein (DUF2400 domain); Pfam match to PF09674.6 DUF2400; draft locus tag CAMGR0001_1306.
       0.800
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
  
 0.635
AKT92861.1
Membrane protein insertion efficiency factor, YidD family; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.583
rnpA
Ribonuclease P, protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.442
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.