STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92324.1Putative protein (DUF2400 domain); Pfam match to PF09674.6 DUF2400; draft locus tag CAMGR0001_1306. (262 aa)    
Predicted Functional Partners:
AKT92321.1
SAM-dependent methyltransferase, MidA family; Pfam matches to PF02636.13 Methyltransf_28, and to PF02636.13 Methyltransf_28; draft locus tag CAMGR0001_1309.
 
     0.832
AKT92319.1
Hypothetical membrane protein (UPF0126 domain); Pfam matches to PF03458.9 UPF0126, and to PF03458.9 UPF0126; draft locus tag CAMGR0001_1311.
  
    0.802
argD
N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase; Bifunctional; Pfam match to PF00202.17 Aminotran_3; draft locus tag CAMGR0001_1310; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.800
AKT92322.1
Hypothetical protein; Draft locus tag CAMGR0001_1308.
       0.800
AKT92323.1
RNA methyltransferase, RsmD family; Pfam matches to PF03602.11 Cons_hypoth95, and to PF03602.11 Cons_hypoth95; draft locus tag CAMGR0001_1307.
       0.800
xth
Exodeoxyribonuclease III (exonuclease III); Pfam match to PF03372.19 Exo_endo_phos; draft locus tag CAMGR0001_1575.
  
 0.756
polA
DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.607
AKT93149.1
Competence protein, ComEC family; Pfam match to PF03772.12 Competence; draft locus tag CAMGR0001_2877.
 
     0.410
nfo
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
  
 
 0.410
pglB
Undecaprenyl-diphosphooligosaccharide--protein glycotransferase; Pfam match to PF02516.10 STT3; draft locus tag CAMGR0001_2013.
  
     0.409
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.