STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (668 aa)    
Predicted Functional Partners:
lig
DNA ligase; Pfam matches to PF14743.2 DNA_ligase_OB_2, and to PF01068.17 DNA_ligase_A_M; draft locus tag CAMGR0001_2022.
     
 0.922
ribF
Bifunctional riboflavin kinase / FMN adenylyltransferase; Bifunctional; Pfam matches to PF01687.13 Flavokinase, and to PF06574.8 FAD_syn, and to PF01687.13 Flavokinase, and to PF06574.8 FAD_syn; draft locus tag CAMGR0001_1260.
 
    0.825
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase; Bifunctional; Pfam match to PF01728.15 FtsJ; draft locus tag CAMGR0001_1258.
  
    0.793
AKT92354.1
Lipocalin domain protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
       0.790
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Pfam match to PF02348.15 CTP_transf_3; draft locus tag CAMGR0001_1254; Belongs to the KdsB family.
       0.776
AKT92358.1
Hypothetical protein; Draft locus tag CAMGR0001_1255.
       0.773
thrC
Threonine synthase; Pfam matches to PF14821.2 Thr_synth_N, and to PF00291.21 PALP; draft locus tag CAMGR0001_1253.
       0.773
AKT92356.1
Hypothetical protein; Draft locus tag CAMGR0001_1257.
       0.762
polA
DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.750
por
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; Pfam matches to PF01855.15 POR_N, and to PF01558.14 POR, and to PF10371.5 EKR, and to PF12838.3 Fer4_7, and to PF02775.17 TPP_enzyme_C; draft locus tag CAMGR0001_2171.
   
   0.719
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.