STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92363.1Aminotransferase, DegT/DnrJ/EryC1/StrS family; Pfam match to PF01041.13 DegT_DnrJ_EryC1; draft locus tag CAMGR0001_1250; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)    
Predicted Functional Partners:
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
       0.800
nadE
NAD synthetase, NH3-dependent; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
       0.795
AKT92191.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Pfam match to PF01041.13 DegT_DnrJ_EryC1; draft locus tag CAMGR0001_1507; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.772
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
    0.762
pglF
UDP-N-acetylglucosamine C-6 dehydratase; Pfam match to PF02719.11 Polysacc_synt_2; draft locus tag CAMGR0001_2008.
 
  
 0.719
AKT92414.1
Oxidoreductase, Gfo/Idh/MocA family; Pfam match to PF01408.18 GFO_IDH_MocA; draft locus tag CAMGR0001_1180.
 
  
 0.678
AKT92365.1
Metallo-beta-lactamase family protein; Pfam match to PF00753.23 Lactamase_B; draft locus tag CAMGR0001_1248.
       0.596
thrC
Threonine synthase; Pfam matches to PF14821.2 Thr_synth_N, and to PF00291.21 PALP; draft locus tag CAMGR0001_1253.
   
   0.572
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Pfam match to PF02348.15 CTP_transf_3; draft locus tag CAMGR0001_1254; Belongs to the KdsB family.
       0.539
AKT92186.1
Zinc-dependent alcohol dehydrogenase; Pfam matches to PF01408.18 GFO_IDH_MocA, and to PF00107.22 ADH_zinc_N; draft locus tag CAMGR0001_1512.
  
  
 0.519
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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