STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92401.1Hypothetical protein; Draft locus tag CAMGR0001_1197. (135 aa)    
Predicted Functional Partners:
pepF
Pfam matches to PF01432.16 Peptidase_M3, and to PF08439.6 Peptidase_M3_N; draft locus tag CAMGR0001_1198.
       0.800
AKT92402.1
UvrD/REP family helicase; Pfam matches to PF13361.2 UvrD_C, and to PF00580.17 UvrD-helicase, and to PF00580.17 UvrD-helicase; draft locus tag CAMGR0001_1196.
       0.800
truB
tRNA pseudouridine 55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.800
sstT
Sodium ion-motive force-driven serine/threonine transporter; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.569
metK
Methionine adenosyltransferase; Pfam matches to PF02773.12 S-AdoMet_synt_C, and to PF00438.16 S-AdoMet_synt_N, and to PF02772.12 S-AdoMet_synt_M; draft locus tag CAMGR0001_1200; Belongs to the AdoMet synthase family.
       0.436
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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