STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92414.1Oxidoreductase, Gfo/Idh/MocA family; Pfam match to PF01408.18 GFO_IDH_MocA; draft locus tag CAMGR0001_1180. (292 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.819
lysS
lysyl-tRNA synthetase; Pfam matches to PF00152.16 tRNA-synt_2, and to PF01336.21 tRNA_anti-codon; draft locus tag CAMGR0001_0491; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.773
AKT92191.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Pfam match to PF01041.13 DegT_DnrJ_EryC1; draft locus tag CAMGR0001_1507; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.683
AKT92363.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Pfam match to PF01041.13 DegT_DnrJ_EryC1; draft locus tag CAMGR0001_1250; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.678
AKT93480.1
Atypical short-chain dehydrogenase/reductase; Draft locus tag CAMGR0001_0132.
   
 
 0.639
AKT92184.1
UDP-N-acetylglucosamine-2-epimerase; Pfam match to PF02350.15 Epimerase_2; draft locus tag CAMGR0001_1514; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.598
pglE
UDP-4-amino-4, 6-dideoxy-alpha-D-N-acetyl-D-glucosamine transaminase; Pfam match to PF01041.13 DegT_DnrJ_EryC1; draft locus tag CAMGR0001_2009; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.597
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.593
maf
Septum formation protein Maf; Pfam match to PF02545.10 Maf; draft locus tags CAMGR0001_1176 and CAMGR0001_1177.
       0.593
pbpA
Penicillin-binding protein 1A; Bifunctional; Pfam matches to PF00912.18 Transgly, and to PF00905.18 Transpeptidase; draft locus tag CAMGR0001_1175.
       0.593
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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