STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaSalanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (847 aa)    
Predicted Functional Partners:
AKT92677.1
Hypothetical protein; Draft locus tag CAMGR0001_0781.
   
 0.994
napL
Nitrate reductase accessory protein; Draft locus tag CAMGR0001_2428.
   
 0.989
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.871
pheT
phenylalanyl-tRNA synthetase, beta subunit; Pfam matches to PF01588.16 tRNA_bind, and to PF03147.10 FDX-ACB, and to PF03484.11 B5, and to PF03483.13 B3_4; draft locus tag CAMGR0001_2845; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
 
 0.856
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
 
  
 0.847
maf
Septum formation protein Maf; Pfam match to PF02545.10 Maf; draft locus tags CAMGR0001_1176 and CAMGR0001_1177.
  
    0.801
AKT92416.1
Putative membrane protein; Draft locus tag CAMGR0001_1178.
       0.800
pbpA
Penicillin-binding protein 1A; Bifunctional; Pfam matches to PF00912.18 Transgly, and to PF00905.18 Transpeptidase; draft locus tag CAMGR0001_1175.
       0.800
thrS
threonyl-tRNA synthetase; Pfam matches to PF00587.21 tRNA-synt_2b, and to PF03129.16 HGTP_anticodon, and to PF07973.10 tRNA_SAD; draft locus tag CAMGR0001_0390; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.776
leuS
leucyl-tRNA synthetase; Pfam matches to PF13603.2 tRNA-synt_1_2, and to PF00133.18 tRNA-synt_1, and to PF09334.7 tRNA-synt_1g; draft locus tag CAMGR0001_1526; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.771
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.