STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92419.1Hypothetical protein; Draft locus tag CAMGR0001_1174. (97 aa)    
Predicted Functional Partners:
AKT92420.1
Putative membrane protein; Draft locus tag CAMGR0001_1173.
       0.773
AKT92421.1
Putative membrane protein; Draft locus tag CAMGR0001_1172.
       0.636
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.481
AKT92416.1
Putative membrane protein; Draft locus tag CAMGR0001_1178.
       0.481
maf
Septum formation protein Maf; Pfam match to PF02545.10 Maf; draft locus tags CAMGR0001_1176 and CAMGR0001_1177.
       0.481
pbpA
Penicillin-binding protein 1A; Bifunctional; Pfam matches to PF00912.18 Transgly, and to PF00905.18 Transpeptidase; draft locus tag CAMGR0001_1175.
       0.481
norZ
Nitric oxide reductase, monomeric type; Pfam match to PF00115.16 COX1; draft locus tag CAMGR0001_1170.
       0.406
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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