STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92636.1Putative toxin-antitoxin system, antitoxin component, Phd/YefM family; Pfam match to PF02604.15 PhdYeFM_antitox; draft locus tag CAMGR0001_0849. (72 aa)    
Predicted Functional Partners:
AKT92635.1
Alpha/beta hydrolase family protein; Pfam match to PF12697.3 Abhydrolase_6; draft locus tag CAMGR0001_0850.
       0.800
ddlA
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.642
AKT92639.1
Putative lipid asymmetry ABC transporter MlaABCDEF component MlaB; Draft locus tag CAMGR0001_0846.
   
   0.625
ruvA
RuvABC resolvasome, subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.599
AKT92640.1
Lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD; Pfam match to PF02470.16 MlaD; draft locus tag CAMGR0001_0845.
       0.584
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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