STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysScysteinyl-tRNA synthetase; Pfam matches to PF01406.15 tRNA-synt_1e, and to PF09190.7 DALR_2; draft locus tag CAMGR0001_0841; Belongs to the class-I aminoacyl-tRNA synthetase family. (476 aa)    
Predicted Functional Partners:
cysE
Serine O-acetyltransferase; Pfam match to PF00132.20 Hexapep; draft locus tag CAMGR0001_0817.
 
  
 0.966
cysK
Cysteine synthase; Pfam match to PF00291.21 PALP; draft locus tag CAMGR0001_0998; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.891
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
 
 0.819
murJ
Lipid II flippase; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.800
AKT92641.1
Lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF; Pfam match to PF00005.23 ABC_tran; draft locus tag CAMGR0001_0844.
 
     0.704
leuS
leucyl-tRNA synthetase; Pfam matches to PF13603.2 tRNA-synt_1_2, and to PF00133.18 tRNA-synt_1, and to PF09334.7 tRNA-synt_1g; draft locus tag CAMGR0001_1526; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.696
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.690
pheT
phenylalanyl-tRNA synthetase, beta subunit; Pfam matches to PF01588.16 tRNA_bind, and to PF03147.10 FDX-ACB, and to PF03484.11 B5, and to PF03483.13 B3_4; draft locus tag CAMGR0001_2845; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.642
hisIE
phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase; Bifunctional; Pfam matches to PF01502.14 PRA-CH, and to PF01503.13 PRA-PH; draft locus tag CAMGR0001_0015; In the N-terminal section; belongs to the PRA-CH family.
     
 0.630
AKT91805.1
rRNA methyltransferase, TrmH family, group 3; Pfam matches to PF00588.15 SpoU_methylase, and to PF08032.8 SpoU_sub_bind; draft locus tag CAMGR0001_2659; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
 
 0.616
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.