STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92718.1SAM-dependent methyltransferase; Pfam match to PF13847.2 Methyltransf_31; draft locus tag CAMGR0001_0718. (269 aa)    
Predicted Functional Partners:
AKT92712.1
ABC transporter, periplasmic substrate-binding protein; Pfam match to PF01497.14 Peripla_BP_2; draft locus tag CAMGR0001_0727.
 
     0.638
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.548
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.548
AKT92711.1
TonB-dependent receptor; Pfam matches to PF00593.20 TonB_dep_Rec, and to PF07715.11 Plug; draft locus tag CAMGR0001_0730.
 
     0.520
AKT92714.1
ABC transporter, ATP-binding protein; Pfam match to PF00005.23 ABC_tran; draft locus tag CAMGR0001_0724.
 
     0.513
AKT93363.1
Hypothetical protein; Pfam match to PF01656.19 CbiA; draft locus tag CAMGR0001_2488.
  
     0.485
AKT92649.1
Putative slipin-associated protein (NfeD domain); Pfam match to PF01957.14 NfeD; draft locus tag CAMGR0001_0829.
  
     0.421
AKT92717.1
Hypothetical protein; Draft locus tag CAMGR0001_0720.
       0.414
hyfE
Hydrogenase-4, membrane component E; Pfam match to PF00420.20 Oxidored_q2; draft locus tag CAMGR0001_1280.
  
     0.413
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.