STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguBN-carbamoylputrescine amidohydrolase; Pfam match to PF00795.18 CN_hydrolase; draft locus tag CAMGR0001_2464. (416 aa)    
Predicted Functional Partners:
aguA
Agmatine deiminase; Pfam match to PF04371.11 PAD_porph; draft locus tag CAMGR0001_2465; Belongs to the agmatine deiminase family.
 
 0.999
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
   
 0.558
AKT92121.1
Hydrolase, carbon-nitrogen family; Pfam match to PF00795.18 CN_hydrolase; draft locus tag CAMGR0001_1596.
  
     0.501
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
   
 
 0.456
AKT92831.1
Putative type II secretion system protein; Pfam match to PF07963.8 N_methyl.
       0.414
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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