STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gneUDP-GlcNAc/Glc 4-epimerase; Pfam match to PF01370.17 Epimerase; draft locus tag CAMGR0001_2021; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (329 aa)    
Predicted Functional Partners:
galU
UTP--glucose-1-phosphate uridylyltransferase; Pfam match to PF00483.19 NTP_transferase; draft locus tag CAMGR0001_1722.
 
  
 0.951
AKT92928.1
Glycosyltransferase, family 2; Pfam match to PF00535.22 Glycos_transf_2; draft locus tag CAMGR0001_2016.
 
   
 0.794
lig
DNA ligase; Pfam matches to PF14743.2 DNA_ligase_OB_2, and to PF01068.17 DNA_ligase_A_M; draft locus tag CAMGR0001_2022.
       0.658
wlaX
Putative polysaccharide biosynthesis protein; Pfam match to PF10108.5 DNA_pol_B_exo2; draft locus tag CAMGR0001_2023.
       0.658
pglK
Flippase; Pfam matches to PF01943.13 Polysacc_synt, and to PF14667.2 Polysacc_synt_C; draft locus tag CAMGR0001_2020.
     
 0.629
AKT92930.1
Polysaccharide pyruvyl transferase; Pfam match to PF04230.9 PS_pyruv_trans; draft locus tag CAMGR0001_2018.
     
 0.617
pglH1
Glycosyltransferase, group 1 family protein; Pfam matches to PF00534.16 Glycos_transf_1, and to PF13579.2 Glyco_trans_4_4; draft locus tag CAMGR0001_2015.
     
 0.616
pglH2
Glycosyltransferase, group 1 family protein; Pfam match to PF00534.16 Glycos_transf_1; draft locus tag CAMGR0001_2017.
     
 0.616
AKT92931.1
Coenzyme F420 hydrogenase/dehydrogenase; Pfam match to PF04432.9 FrhB_FdhB_C; draft locus tag CAMGR0001_2019.
       0.589
AKT92200.1
Bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase; Pfam matches to PF01050.14 MannoseP_isomer, and to PF00483.19 NTP_transferase; draft locus tag CAMGR0001_1498; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.538
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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