STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT92996.1uracil-DNA glycosylase family protein; Pfam match to PF03167.15 UDG; draft locus tag CAMGR0001_0677. (218 aa)    
Predicted Functional Partners:
hemK
protein-(glutamine-N5) methyltransferase; Pfam match to PF05175.10 MTS; draft locus tag CAMGR0001_0678.
       0.800
AKT92998.1
Peptidase, M48 family; Pfam matches to PF01435.14 Peptidase_M48, and to PF16491.1 Peptidase_M48_N; draft locus tag CAMGR0001_0679.
       0.800
AKT92999.1
ABC transporter, ATP-binding protein; Pfam matches to PF00005.23 ABC_tran, and to PF00005.23 ABC_tran, and to PF16326.1 ABC_tran_CTD, and to PF12848.3 ABC_tran_Xtn; draft locus tag CAMGR0001_0680.
       0.775
pycB
Pyruvate carboxylase, subunit B; Pfam matches to PF02436.14 PYC_OADA, and to PF00364.18 Biotin_lipoyl, and to PF00682.15 HMGL-like; draft locus tag CAMGR0001_0046.
 
    0.609
AKT93000.1
Alpha/beta hydrolase family protein; Pfam match to PF00756.16 Esterase; draft locus tag CAMGR0001_0684.
       0.552
tsaB
N6-L-threonylcarbamoyladenine synthase, TsaB subunit; Draft locus tag CAMGR0001_1625.
  
    0.536
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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