STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93039.1Anaerobic glycerol-3-phosphate dehydrogenase; Pfam matches to PF02754.12 CCG, and to PF02754.12 CCG, and to PF13534.2 Fer4_17; draft locus tag CAMGR0001_1802. (434 aa)    
Predicted Functional Partners:
AKT92313.1
Gycolate oxidase, subunit GlcD-related protein; Pfam matches to PF02913.15 FAD-oxidase_C, and to PF01565.19 FAD_binding_4; draft locus tag CAMGR0001_1317.
 
 0.988
hprA
2-hydroxyacid dehydrogenase; Pfam matches to PF02826.15 2-Hacid_dh_C, and to PF00389.26 2-Hacid_dh; draft locus tag CAMGR0001_0238; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.914
AKT91833.1
HAD-superfamily hydrolase, subfamily IA, probable phosphoglycolate phosphatase; Pfam match to PF13419.2 HAD_2; draft locus tag CAMGR0001_2621.
     
 0.902
AKT92537.1
Putative protein, putative phosphoglycolate phosphatase; Pfam match to PF13419.2 HAD_2; draft locus tag CAMGR0001_1002.
     
 0.902
katA
Catalase; Pfam matches to PF00199.15 Catalase, and to PF06628.8 Catalase-rel; draft locus tag CAMGR0001_1415.
     
  0.900
AKT93041.1
Putative protein (DUF2603 domain); Pfam match to PF10788.5 DUF2603; draft locus tag CAMGR0001_1804; Belongs to the UPF0763 family.
       0.790
hemN3
Oxygen-independent coproporphyrinogen III oxidase; Pfam matches to PF04055.17 Radical_SAM, and to PF06969.12 HemN_C; draft locus tag CAMGR0001_1803; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.769
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
       0.767
hemB
Porphobilinogen synthase; Pfam match to PF00490.17 ALAD; draft locus tag CAMGR0001_1808; Belongs to the ALAD family.
       0.762
AKT93043.1
Fic/DOC family protein; Pfam match to PF02661.14 Fic; draft locus tag CAMGR0001_1806.
     
 0.741
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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