STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93049.1Hypothetical protein; Draft locus tag CAMGR0001_1812. (180 aa)    
Predicted Functional Partners:
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
       0.800
gidB
16S rRNA m7G527 methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
       0.800
AKT93048.1
Hypothetical protein; Draft locus tag CAMGR0001_1811.
       0.773
hemB
Porphobilinogen synthase; Pfam match to PF00490.17 ALAD; draft locus tag CAMGR0001_1808; Belongs to the ALAD family.
       0.609
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
       0.605
AKT93041.1
Putative protein (DUF2603 domain); Pfam match to PF10788.5 DUF2603; draft locus tag CAMGR0001_1804; Belongs to the UPF0763 family.
       0.590
AKT93039.1
Anaerobic glycerol-3-phosphate dehydrogenase; Pfam matches to PF02754.12 CCG, and to PF02754.12 CCG, and to PF13534.2 Fer4_17; draft locus tag CAMGR0001_1802.
       0.584
AKT93044.1
Hypothetical protein; Draft locus tag CAMGR0001_1807.
       0.557
AKT93043.1
Fic/DOC family protein; Pfam match to PF02661.14 Fic; draft locus tag CAMGR0001_1806.
       0.553
hemN3
Oxygen-independent coproporphyrinogen III oxidase; Pfam matches to PF04055.17 Radical_SAM, and to PF06969.12 HemN_C; draft locus tag CAMGR0001_1803; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.549
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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