STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93091.1Hypothetical protein; Draft locus tag CAMGR0001_2800. (178 aa)    
Predicted Functional Partners:
AKT93092.1
Putative type II secretion system protein; Pfam match to PF07963.8 N_methyl; draft locus tag CAMGR0001_2801.
       0.800
AKT93093.1
Putative type II secretion system protein; Pfam match to PF07963.8 N_methyl; draft locus tag CAMGR0001_2802.
       0.785
raiA
Translation inhibitor protein RaiA; Pfam matches to PF02482.15 Ribosomal_S30AE, and to PF16321.1 Ribosom_S30AE_C; draft locus tag CAMGR0001_2799.
       0.772
yfiO
Beta-barrel assembly machinery complex, BamD/YfiO lipoprotein; Pfam match to PF13525.2 YfiO; draft locus tag CAMGR0001_2803.
       0.508
lon
DNA-binding, ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.505
AKT93089.1
Hypothetical protein; Draft locus tag CAMGR0001_2798.
       0.458
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.