STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93130.12-hydroxyglutaryl-CoA dehydratase; Pfam match to PF06050.9 HGD-D; draft locus tag CAMGR0001_2856. (405 aa)    
Predicted Functional Partners:
AKT93131.1
Activator of 2-hydroxyglutaryl-CoA dehydratase / 2-hydroxyglutaryl-CoA dehydratase fusion protein; Pfam matches to PF09989.5 DUF2229, and to PF01869.16 BcrAD_BadFG, and to PF01869.16 BcrAD_BadFG, and to PF06050.9 HGD-D; draft locus tag CAMGR0001_2857.
   
 0.996
hgdC
Activator of 2-hydroxyglutaryl-CoA dehydratase; Pfam match to PF01869.16 BcrAD_BadFG; draft locus tag CAMGR0001_0539.
   
 0.742
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
    0.416
trmD
tRNA m1G37 methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.408
rimM
16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.408
AKT93135.1
Putative RNA-binding protein (KH domain); Pfam match to PF13083.2 KH_4; draft locus tag CAMGR0001_2862.
       0.408
rpsP
Pfam match to PF00886.15 Ribosomal_S16; draft locus tag CAMGR0001_2863; Belongs to the bacterial ribosomal protein bS16 family.
       0.408
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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