STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93180.1Na+-dependent transporter, SNF family; Pfam matches to PF00209.14 SNF, and to PF00209.14 SNF; draft locus tag CAMGR0001_0602; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (455 aa)    
Predicted Functional Partners:
nadD/rsfS
Fused nicotinate-mononucleotide adenylyltransferase / ribosomal silencing factor; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
    0.765
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.762
AKT93178.1
Hypothetical protein; Draft locus tag CAMGR0001_0604.
       0.762
cbiL
Co/Ni ABC transporter CbiKLMQO, membrane protein CbiL; Draft locus tag CAMGR0001_0610.
   
   0.535
cbiK
Co/Ni ABC transporter CbiKLMQO, periplasmic substrate-binding protein CbiK; Pfam match to PF10670.5 DUF4198; draft locus tag CAMGR0001_0607.
       0.521
cbiO
Co/Ni ABC transporter CbiKLMQO, ATP-binding protein CbiO; Pfam match to PF00005.23 ABC_tran; draft locus tag CAMGR0001_0612.
  
    0.514
cbiQ
Co/Ni ABC transporter CbiKLMQO, membrane protein CbiQ; Draft locus tag CAMGR0001_0611.
       0.511
cbiM
Co/Ni ABC transporter CbiKLMQO, membrane protein CbiM; Pfam match to PF01891.12 CbiM; draft locus tag CAMGR0001_0609.
       0.511
AKT93175.1
Hypothetical protein; Draft locus tag CAMGR0001_0608.
       0.511
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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