STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thiSThiamin biosynthesis protein; Pfam match to PF02597.16 ThiS; draft locus tag CAMGR0001_0576. (67 aa)    
Predicted Functional Partners:
thiF
ThiS adenylyltransferase; Pfam matches to PF00899.17 ThiF, and to PF14453.2 ThiS-like; draft locus tag CAMGR0001_0580.
    
  0.900
AKT93199.1
ABC transporter, ATP-binding protein; Pfam matches to PF00005.23 ABC_tran, and to PF00005.23 ABC_tran, and to PF12848.3 ABC_tran_Xtn; draft locus tag CAMGR0001_0575.
  
    0.775
aas
Bifunctional; Pfam matches to PF00501.24 AMP-binding, and to PF01553.17 Acyltransferase, and to PF07690.12 MFS_1; draft locus tag CAMGR0001_2165.
  
  
 0.609
thiG
ThiGH complex, thiazole synthase subunit ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.590
htrA
Periplasmic heat shock serine protease HtrA, Do family; Pfam matches to PF13365.2 Trypsin_2, and to PF13180.2 PDZ_2, and to PF13180.2 PDZ_2; draft locus tag CAMGR0001_0711; Belongs to the peptidase S1C family.
   
 
 0.588
AKT93197.1
Hypothetical protein; Draft locus tag CAMGR0001_0577.
       0.554
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.518
AKT93200.1
Putative Co/Zn/Cd cation transporter; Pfam match to PF01545.17 Cation_efflux; draft locus tag CAMGR0001_0573; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.501
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.465
katA
Catalase; Pfam matches to PF00199.15 Catalase, and to PF06628.8 Catalase-rel; draft locus tag CAMGR0001_1415.
   
 
 0.446
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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