STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaEDNA polymerase III, alpha subunit; Pfam matches to PF07733.8 DNA_pol3_alpha, and to PF02811.15 PHP, and to PF14579.2 HHH_6; draft locus tag CAMGR0001_0475. (1381 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III, beta subunit; Pfam matches to PF02767.12 DNA_pol3_beta_2, and to PF00712.15 DNA_pol3_beta, and to PF02768.11 DNA_pol3_beta_3; draft locus tag CAMGR0001_0277.
    
 0.996
holA
DNA polymerase III, delta subunit; Draft locus tag CAMGR0001_1989.
   
 0.996
dnaX
DNA polymerase III, gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
 0.996
holB
DNA polymerase III, delta prime subunit; Pfam match to PF13177.2 DNA_pol3_delta2; draft locus tag CAMGR0001_1974.
 
 0.991
dnaQ
DNA polymerase III, epsilon subunit; Pfam match to PF00929.20 RNase_T; draft locus tag CAMGR0001_2825.
    
 0.930
ssb-2
Single-stranded DNA-binding protein; Pfam match to PF00436.21 SSB; draft locus tag CAMGR0001_2141.
    
 
 0.904
ssb
Single-stranded DNA binding protein; Pfam match to PF00436.21 SSB; draft locus tag CAMGR0001_1987.
    
 
 0.904
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
   
 0.683
polA
DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.662
dinP
DNA polymerase IV; Pfam matches to PF00817.16 IMS, and to PF11799.4 IMS_C; draft locus tag CAMGR0001_1426.
 
  
 0.651
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.