STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
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[Homology]
Score
AKT93364.1Putative lysine decarboxylase family protein; Pfam match to PF03641.10 Lysine_decarbox; draft locus tag CAMGR0001_2487; Belongs to the LOG family. (201 aa)    
Predicted Functional Partners:
mnmA
tRNA U34 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
    0.808
pepQ
X-Pro dipeptidase; Pfam match to PF00557.20 Peptidase_M24; draft locus tag CAMGR0001_2490.
       0.565
folK
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase; Pfam match to PF01288.16 HPPK; draft locus tag CAMGR0001_2489.
       0.565
AKT93363.1
Hypothetical protein; Pfam match to PF01656.19 CbiA; draft locus tag CAMGR0001_2488.
       0.565
aroD
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.546
sppA
Signal peptide peptidase protease IV; Pfam match to PF01343.14 Peptidase_S49; draft locus tag CAMGR0001_2493.
       0.420
AKT93359.1
Metallo-dependent hydrolase, subgroup D; Pfam match to PF01979.16 Amidohydro_1; draft locus tag CAMGR0001_2492.
       0.420
nrdB
Aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
   
    0.406
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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